Data Analysis

Reads, inspects, writes, transforms, and preflights local DICOM datasets and pixel data. Applies to DICOM metadata, transfer syntaxes, compression plugins, frames, private elements, JSON, and bounded de-identification r…

NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.

Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery including SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, paral…

End-to-end data engineering pipeline for Harvard Art Museums API with ETL, SQL analytics, and Streamlit visualization

Processes large tabular scientific datasets with Vaex expressions, filtered views, streamed statistics, binned visualizations, and file conversion. Use for larger-than-RAM HDF5, Arrow, CSV, or Parquet analysis, virtual…

Infers candidate gene regulatory networks from bulk or single-cell expression data using AertsLab Arboreto GRNBoost2 and GENIE3. Use for transcription factor-target association ranking, compatible Dask execution, sparse…

Performs bulk RNA-seq differential expression analysis with PyDESeq2, including count validation, formula designs, explicit contrasts, Wald tests, FDR correction, coefficient-matched LFC shrinkage, and result visualizat…

Analyzes, validates, converts, and transforms materials structures and computed materials data with pymatgen. Use for local phase diagrams, symmetry sensitivity, electronic-structure I/O, and bounded Materials Project q…

Queries and downloads public cancer imaging data from NCI Imaging Data Commons. Supports IDC collection discovery, DICOM access, radiology (CT, MR, PET) and pathology AI datasets, metadata SQL, visualization, licensing,…

数学建模赛题分析与建模设计合并阶段。用于读取题面和附件，完成子问题拆解、数据理解、假设预检、变量定义、模型公式、目标函数、约束条件、求解策略和可交给代码实现的建模报告。

Build ETL pipelines and analytics dashboards for Harvard Art Museums API data using Python, SQL, and Streamlit

Stores and queries chunked N-D scientific arrays with Zarr-Python 3, including codecs, sharding, S3/GCS storage, and NumPy/Dask/Xarray integration. Use for array layout, bounded I/O, format migration, or scientific meta…

Query and analyze Logfire telemetry data — traces, logs, spans, metrics, summaries, and SQL results. Use this skill when the user asks to "query logfire", "search traces", "find logs", "query data", "search spans", "loo…

Builds and audits reproducible NeuroKit2 research workflows for physiological time-series preprocessing, event/interval analysis, multimodal alignment, variability, and complexity. Use when code imports neurokit2 or nee…

End-to-end data engineering and analytics application using Harvard Art Museums API with ETL pipelines, SQL analytics, and Streamlit visualization

Provides Python/HTSlib workflows for genomic files. Used when reading, querying, filtering, or writing SAM/BAM/CRAM, VCF/BCF, FASTA/FASTQ, or tabix data with pysam, including pileup, coverage, indexing, and CRAM referen…

Performs constraint-based metabolic modeling with COBRApy, including FBA, pFBA, FVA, gene knockouts, flux sampling, growth media, production envelopes, gap filling, and SBML model validation for systems biology and meta…

Reads, inspects, and writes Flow Cytometry Standard (FCS) 2.0, 3.0, and 3.1 files with FlowIO. Use for low-level FCS metadata and channel inspection, NumPy event extraction, multi-dataset files, table export, and FCS 3.…

Provides Therapeutics Data Commons workflows through PyTDC for registry discovery, dataset access, task-aware splits, evaluator metrics, benchmark groups, and bounded molecular-oracle scoring. Use when working with TDC…

Performs RNA velocity analysis with scVelo from spliced and unspliced single-cell RNA counts. Fits deterministic or dynamical models, examines gene phase portraits, builds velocity graphs, estimates relative latent time…

Queries the U.S. Treasury Fiscal Data REST API for federal financial data. No API key required. Use for national debt (Debt to the Penny), Daily Treasury Statements, Monthly Treasury Statements, Treasury securities auct…

Manages biological datasets and models with LaminDB, including artifact registration, lineage tracking, schema validation, Bionty ontology annotation, query/search, collections, branches, storage, and workflow integrati…

Processes, cleans, compares, and searches tandem mass spectra with matchms. Use for MS/MS file I/O, metadata harmonization, peak filtering, spectral similarity, library matching, score matrices, and molecular-similarity…

Supports Gtars for local genomic interval models and set algebra, overlaps and counts, consensus and coverage, tokenization, fragment processing, and refget/BEDbase planning across Python, Rust, and the CLI.

Extracts and preprocesses whole-slide histology image tiles with Histolab. Use for WSI inspection, tissue masks, random/grid/score-based tile extraction, H&E stain normalization, and tile dataset preparation. For multip…

Performs genomic interval overlap, nearest, merge, coverage, complement and subtraction on Polars DataFrames, and reads or writes BED, VCF, BCF, BAM, CRAM, GFF, GTF, FASTA and FASTQ data. Use for coordinate-aware genomi…

Analyzes Neuropixels extracellular recordings end-to-end with SpikeInterface. Covers loading SpikeGLX/Open Ephys/NWB data, preprocessing, drift/motion correction, Kilosort4 (and CPU) spike sorting, quality metrics, and…

Processes mass spectrometry data with pyOpenMS. Supports proteomics and metabolomics workflows—feature detection, peptide/protein identification, label-free quantification, adduct/accurate-mass annotation, and complex L…

Best practices and guidelines for working with Postgres. Covers schema design, indexing strategies, query optimization, migrations, and common pitfalls. Use when writing SQL, designing database schemas, optimizing queri…

数学建模编程实现与数据图表生成阶段。根据 ANALYSIS_MODELING_REPORT.md 编写可复现代码、运行求解、验证约束、输出 RESULTS_REPORT.md 并生成论文可用的数据驱动图表 PDF。

Load a sharded, on-disk dataset (sharded .npy, Parquet/Arrow, raw binary, sharded HDF5, custom layouts) into a distributed cuPyNumeric ndarray via a manual partition + leaf @task launch with CPU/OMP/GPU variants. Use wh…

Stores and retrieves genomic variant calls with TileDB-VCF. Use for indexed single-sample VCF/BCF ingestion, incremental cohorts, region and sample queries, streaming results, allele statistics, QC, and VCF/BCF export l…

Reconstruct data structures by analyzing memory access patterns across functions

Use people-search aggregators and primary public records to find addresses, phone numbers, relatives, age and background on a person, and to audit and remove your own exposure. Covers Spokeo, BeenVerified, Whitepages, T…

Read datasheets and technical PDFs with `pcb scan`.

Used for extracting selected metadata from one DICOM file and flagging standard-tag PHI presence. Not for anonymization or clinical use.

CDF Data Modeling limits: concurrency (429s), pagination, batching, search vs filter, QueuedTaskRunner, and the cap on LLM calls over query results (5 default, 50 max, cached). Triggers: DMS limits, 429, pagination, nex…

Build ETL pipelines and analytics dashboards using Harvard Art Museums API data with Python, SQL, and Streamlit

End-to-end data engineering and analytics application for Harvard Art Museums API with ETL pipelines, SQL analytics, and Streamlit visualization

Read and write large cuPyNumeric arrays to HDF5 with Legate's parallel, distributed HDF5 I/O (legate.io.hdf5: to_file, from_file, from_file_batched). Use when a developer needs to save a cuPyNumeric array to an .h5/.hdf…

Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and cha…

Fetch weather/climate data via Earth2Studio data sources for specific variables and times. Do NOT use for inference pipelines, model discovery, or installation.

End-to-end data engineering and analytics application for Harvard Art Museums API with ETL pipelines, SQL analytics, and Streamlit visualization

Find a direct path to structured data through ready-made workflows, data APIs, and indexes. Follow the search skill to discover and inspect tools, then the scrape skill to execute them.

Use this skill when reading video-analytics metrics, incidents, alerts, and sensor data via the VA-MCP server (port 9901). Not for live VLM or incident-range narrative reports.

一套模板驱动的数据可视化、PPT 演示与整页报告生成 skill，既能严格从 Lupi、Basics、Glance、Maps 与 Interactive gallery 的真实实现生成 HTML 图表，也能从 Presentation Mode 生成 HTML/PDF 演示，或从报告模板生成整页 HTML 报告；以 Mono 为保底，能按数据语义自动选择内置彩色预设，也支持用户明确提供的自定义色板。地图仅在用户明确要求时启用，同一交付…

When the user wants to find patterns in what content works and what doesn't. Also use when the user mentions 'what's working,' 'content patterns,' 'best topics,' 'best format,' 'best time to post,' 'analyze my content,'…

Build end-to-end data engineering pipelines using Harvard Art Museums API with ETL, SQL analytics, and Streamlit visualization

Expert guidance on choosing the right Mapbox search tool and parameters for geocoding, POI search, and location discovery

Extract and interpret embedded file metadata with exiftool — EXIF GPS coordinates, camera make, model and serial, DateTimeOriginal and CreateDate timestamps, XMP and IPTC fields, and Office and PDF properties such as Au…