Skill catalog
295research & science agent skills synced from skills.sh, with their install counts. Read them here, or let your agent fetch the right one through the Graph-of-Skills MCP server.
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- dbsnp-database google-deepmind/science-skills
Use when you want to look up, map, and search for short genetic variants (SNPs, indels) in NCBI's dbSNP database. Resolves between rsIDs, genomic coordinates in VCF format, and HGVS strings. For an rsID, returns variant…
2,173 installs - math-reasoning lingzhi227/agent-research-skills
Formal mathematical reasoning for research papers — derive equations, write proofs, formalize problem settings, select statistical tests, and generate LaTeX math notation. Use when the user needs mathematical derivation…
2,172 installs - embl-ebi-ols google-deepmind/science-skills
Query and search the EMBL-EBI Ontology Lookup Service (OLS) for biomedical ontology terms, definitions, and hierarchies across 250+ ontologies (e.g., GO, DOID, HP). Use when the user asks to search for terms, retrieve d…
2,168 installs - interpro-database google-deepmind/science-skills
Identify domains, families, and sites in proteins; find all proteins in a family or sharing a domain; explore species distribution for a domain; annotate genomes with protein families and GO terms. InterPro combines 14…
2,164 installs - string-database google-deepmind/science-skills
Query the STRING database for protein-protein interactions (PPIs), functional enrichment, and homology. Use when the user asks about interactions between specific proteins, interaction evidence, confidence scores, prote…
2,164 installs - foldseek-structural-search google-deepmind/science-skills
Performs 3D structural searches of proteins against various databases (PDB, AlphaFold, CATH, MGnify, etc.) using the Foldseek API. Use ONLY when the user provides a physical 3D coordinate file (.cif, .mmcif, or .pdb) an…
2,163 installs - gtex-database google-deepmind/science-skills
Use when you want to retrieve quantitative RNA expression data and variant eQTL information from the GTEx (Genotype-Tissue Expression) Project across 54 non-diseased tissue sites.
2,158 installs - hypothesis-generation k-dense-ai/scientific-agent-skills
Formulates evidence-bounded scientific questions, candidate hypotheses, rival explanations, causal or associational claims, discriminating predictions, measurements, and preregistration-ready analysis plans. Used when t…
2,143 installs - ucsc-conservation-and-tfbs google-deepmind/science-skills
Fetch Evolutionary Conservation scores (phyloP, phastCons) and Transcription Factor Binding Sites (TFBS) from the UCSC Genome Browser. Use when analyzing whether genomic variants or regions are evolutionarily conserved,…
2,126 installs - systems-thinking refoundai/lenny-skills
Help users think in systems and understand complex dynamics. Use when someone is dealing with multi-stakeholder problems, trying to understand second-order effects, managing platform ecosystems, or analyzing complex org…
2,098 installs - scholar-evaluation k-dense-ai/scientific-agent-skills
Provides qualitative-first, evidence-traceable developmental review of scholarly works and audit low-stakes research-assessment rubrics with optional local quality controls. Never use for ranking people or consequential…
2,097 installs - bgpt-paper-search k-dense-ai/scientific-agent-skills
Searches BGPT scientific papers by topic or DOI and retrieves claim-level evidence extracted from full text, including experiments, reported statistics, scope, limitations, and provenance. Use for literature reviews, ev…
2,076 installs - x-ray-a-company useosint/skills
Corporate due-diligence workflow — resolve a brand or website to its registered legal entity, map group structure and beneficial ownership, profile officers and directors, enumerate the digital estate, and screen litiga…
2,073 installs - research-grants k-dense-ai/scientific-agent-skills
Supports research proposal preparation and review for NSF, NIH, DOE, DARPA, and Taiwan NSTC, including opportunity-specific requirements, aims, review criteria, budgets, broader impacts, forms, and resubmissions. Use fo…
2,061 installs - exa-search cline/skills
Deep research powered by Exa. Use for lead generation, literature reviews, deep dives, competitive analysis, or any query where one search falls short, including phrases like 'research this', 'find everything about', 'f…
2,044 installs - read-deleted-pages useosint/skills
Recover deleted, edited or historical web content using the Wayback Machine and its CDX API, archive.today, Common Crawl and Memento/Timetravel. Use when a page is deleted, changed or 404s, checking what a site used to…
2,033 installs - market-research-reports k-dense-ai/scientific-agent-skills
Builds evidence-traceable market research reports and assumption-driven market sizing or forecast scenarios. Use for market definition, industry and customer evidence, competitive landscapes, TAM/SAM/SOM reconciliation,…
2,031 installs - academic-research-suite imbad0202/academic-research-skills-codex
ARS-Codex research, writing, manuscript review, study screening, and experiments. Use for deep research, literature or systematic reviews, meta-analysis, research questions, drafts, revisions, roadmaps, abstracts, citat…
2,003 installs - literature-review davila7/claude-code-templates
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-anal…
1,990 installs - research-lookup k-dense-ai/scientific-agent-skills
Compiles current scholarly evidence for a scientific manuscript or research brief when the user explicitly asks to gather literature, references, background evidence, competing findings, or a manuscript research packet.…
1,990 installs - ccf-idea-optimizer mikubaka88/ccfa-skills
Develop and optimize rough CCF research ideas into problems, insights, mechanisms, and evidence plans. Use for 优化idea, 具象化idea, 找方向, 方向探索, and rescue routes when development is the requested deliverable. Judging whether…
1,981 installs - geomaster k-dense-ai/scientific-agent-skills
Supports geospatial research workflows for remote sensing, vector and raster GIS, spatial statistics, terrain and network analysis, and machine learning for Earth observation. Use when processing satellite imagery, alig…
1,977 installs - ccf-experiment-designer mikubaka88/ccfa-skills
Design and interpret CCF experiments: datasets, baselines, metrics, ablations, execution specifications, observed feedback, and result-table contents. Use for 设计实验, 消融, benchmark planning, 实验结果分析, and evidence design wi…
1,976 installs - ccf-literature-searcher mikubaka88/ccfa-skills
Find and verify external literature, prior art, datasets, benchmarks, and citation candidates. Use for 文献检索, 相关工作, benchmark搜索, and research opportunity maps. Recurring recent-paper watch belongs to ccf-literature-monit…
1,975 installs - ccf-integrity-auditor mikubaka88/ccfa-skills
Audit existing CCF claims, numbers, terminology, and citations against supplied or verified evidence. Use for 引用核验, claim审计, 数字一致性, and BibTeX/context checks. Full scientific review belongs to ccf-paper-reviewer; new li…
1,971 installs - ccf-idea-reviewer mikubaka88/ccfa-skills
Assess research ideas for value, novelty, insight, and mechanism. Use for 思路审核, 靠谱吗, 值得做吗, 创新够不够, idea review, scoring, and ranking; no numeric-score request is needed. Default to concept-only review without experiment…
1,966 installs - ccf-literature-monitor mikubaka88/ccfa-skills
Scan recent arXiv/OpenReview papers, venue feeds, labs, and competitors for overlap. Use for 竞品监控, 新论文追踪, 论文跟踪, and recurring novelty watch. Give dated evidence and changes since the prior scan. Broad related-work retri…
1,964 installs - clinical-reports k-dense-ai/scientific-agent-skills
Creates safety-bounded draft structures and runs local deterministic checks for clinical case, diagnostic, trial, safety, and aggregate research reports. Use only with synthetic, de-identified, or aggregate inputs and v…
1,961 installs - layers-domain jamiemill/layers-skills
Techniques for mapping a domain's concepts, terminology conflicts, and bounded contexts — the raw material the conceptual model is built from
1,958 installs - clinical-decision-support k-dense-ai/scientific-agent-skills
Prepares and validates research-only clinical decision-support evaluation, evidence-profile, cohort, survival, biomarker/model, privacy, and governance artifacts. Supports aggregate or synthetic research documentation a…
1,956 installs - rdkit k-dense-ai/scientific-agent-skills
Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpl…
1,954 installs - layers-observed-behaviour jamiemill/layers-skills
Techniques for planning user research and synthesising it into grounded, confidence-rated findings about what users actually do
1,943 installs - adaptyv k-dense-ai/scientific-agent-skills
Uses the Adaptyv Bio Foundry API and Python SDK to design protein characterization experiments, estimate costs, submit sequences, monitor laboratory progress, and retrieve results. Applies to Adaptyv Foundry, its target…
1,941 installs - molecular-dynamics k-dense-ai/scientific-agent-skills
Runs and analyzes molecular dynamics simulations with OpenMM and MDAnalysis. Sets up protein/small molecule systems, defines force fields, runs energy minimization and production MD, and analyzes trajectories (RMSD, RMS…
1,940 installs - fluidsim k-dense-ai/scientific-agent-skills
Plans, configures, inspects, restarts, and analyzes bounded FluidSim computational-fluid-dynamics simulations with explicit numerical-validity and HPC safety checks. Use for FluidSim solver selection, parameter review,…
1,938 installs - medchem k-dense-ai/scientific-agent-skills
Applies medicinal chemistry filters for compound triage, using drug-likeness rules (Lipinski, Veber, CNS), structural alert catalogs (PAINS, NIBR, ChEMBL), complexity metrics, and the medchem query language for library…
1,926 installs - depmap k-dense-ai/scientific-agent-skills
Retrieves and analyzes Cancer Dependency Map (DepMap) release data, including CRISPR Chronos gene effects, cancer model annotations, omics biomarkers, and PRISM drug sensitivity. Supports cancer-selective dependency, co…
1,925 installs - cirq k-dense-ai/scientific-agent-skills
Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or running quantum characterization experiments. Best for Google hardware, noise modeling, and low-level…
1,924 installs - diffdock k-dense-ai/scientific-agent-skills
Predicts protein-small-molecule binding poses with DiffDock and DiffDock-L from PDB or sequence plus SMILES/SDF/MOL2. Covers batch docking, pose triage, confidence interpretation, and validation. Use for molecular docki…
1,924 installs - pathml k-dense-ai/scientific-agent-skills
Supports local computational pathology research with PathML: slide loading and tiling, preprocessing and QC, h5path storage, multiplex quantification, spatial graphs, and bounded model inference. Use for whole-slide H&E…
1,923 installs - etetoolkit k-dense-ai/scientific-agent-skills
Analyzes, manipulates, compares, annotates, and visualizes phylogenetic or other hierarchical trees with ETE 4. Supports Newick/Nexus tree I/O, topology edits and pattern matching, Robinson-Foulds comparisons, gene-tree…
1,921 installs - geniml k-dense-ai/scientific-agent-skills
Supports audited local Geniml genomic-interval workflows: validate BED and universe contracts, plan Region2Vec or scEmbed runs, inspect model/tokenizer compatibility, and assess consensus universes.
1,921 installs - market-research-reports davila7/claude-code-templates
Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics an…
1,921 installs - nature-paper-xray yuan1z0825/nature-skills
Read one supplied paper closely enough to reconstruct how its authors actually got there, rather than restating what the abstract claims. Use for 精读论文, 讲透这篇论文, 把这篇读懂, 作者为什么这么设计, 这个公式怎么推出来的, paper x-ray, and deep single-…
1,920 installs - phylogenetics k-dense-ai/scientific-agent-skills
Builds and analyzes phylogenetic trees using MAFFT multiple sequence alignment, IQ-TREE maximum likelihood with ModelFinder and branch support, and FastTree approximate inference. Uses ETE3 for tree summaries and visual…
1,917 installs - qutip k-dense-ai/scientific-agent-skills
Simulate and audit closed and open quantum-system models with QuTiP 5, including deterministic, trajectory, steady-state, spectral, and phase-space workflows. Use for local quantum-dynamics work where physical assumptio…
1,910 installs - rowan k-dense-ai/scientific-agent-skills
Rowan is a cloud-native molecular modeling and medicinal-chemistry workflow platform with a Python API. Use for pKa and macropKa prediction, conformer and tautomer ensembles, docking and analogue docking, protein-ligand…
1,909 installs - glycoengineering k-dense-ai/scientific-agent-skills
Analyzes and engineers protein glycosylation by scanning canonical N-glycosylation sequons, describing S/T-rich regions, checking curated glycan evidence, and preparing NetNGlyc, NetOGlyc and GlycoSHIELD workflows. Use…
1,901 installs - primekg k-dense-ai/scientific-agent-skills
Queries a pinned Precision Medicine Knowledge Graph (PrimeKG) CSV for typed gene, drug, disease, and phenotype nodes, direct associations, disease context, and one- or two-hop paths. Use for PrimeKG reproducibility, bio…
1,901 installs - deep-research lingzhi227/agent-research-skills
Conduct systematic academic literature reviews in 6 phases, producing structured notes, a curated paper database, and a synthesized final report. Output is organized by phase for clarity.
1,895 installs